Selected Publications
Below are selected publications by Cornell CAC staff and
researchers who have conducted research using CAC or CAC-supported resources.
2024
A Hybrid, Non-Stationary Stochastic Watershed Model (SWM) for Uncertain Hydrologic Simulations Under Climate Change
Z. Brodeur, S. Wi, G. Shabestainipour, J. Lamontagne & S. Steinschneider
Water Resources Research
A Snapshot Review on Soft Materials Assembly Design Utilizing Machine Learning Methods
M.M. Martirossyan, H. Du, J. Dshemuchadse & C.X. Du
MRS Advances
Building a Federated Catalog for CyberTraining Materials: The HPC-ED Pilot Project
M.P. Thomas, S. Mehringer, K. Cahill, C. Dey, B. Guilfoos, et al.
PEARC '24
Can We Win the "Names Game"? Tactics for Large-Scale Demographic Research in Entrepreneurship and Innovation
M. Marx
Industry and Innovation
Chemoresistance to Additive PARP/P13K Dual Inhibition in Triple-Negative Breast Cancer Cell Lines is Associated with Adaptive Stem Cell-Like Prevalence
P.E. Petrella, Jason W. Chen, G.O Ravelo & B.D. Cosgrove
PubMed Preprint
Coherent Control of the Translational and Point Group Symmetries of Crystals with Light
G. Khalsa, J.Z. Kaaret & N.A. Benedek
Physical Review B
Data Refusal from Below: A Framework for Understanding, Evaluating, and Envisioning Refusal as Design
J. Zong & J.N. Matias
ACM Journal on Responsible Computing
Diagnostic Benchmarking of Many-Objective Evolutionary Algorithms for Real-World Problems
J.Z. Salazar, D. Hadka, P. Reed, H. Seada & K. Deb
Engineering Optimization
Dynamics of Neisseria gonorrhoeae transmission among female sex workers and clients: A mathematical modeling study
H.H. Ayoub, M. Tomy, H. Chemaitelly, R. Omori, K. Buse, N. Law, S. Hawkes & L.J. Abu-Raddad
Epidemics
Enhancing Depth Resolution of Multislice Ptychography with Data-Driven Prior and Regularization
C.-H. Lee & D.A. Muller
Microscopy and Microanalysis
Exploring Code Portability Solutions for HEP with a Particle Tracking Test Code
H. Ather, S. Berkman, G. Cerati, M. Kortelainen, K.H.M Kwok, S. Lantz, et al.
arXiv
Fostering a Thriving Virtual Organizational Culture: The Development of Metrics for Ten Soft Skills in the Case of XSEDE
K. Kee, H. Jankowski, R. Knepper, W. Snapp-Childs & R. Brady
SN Computer Science
From Buzzes to Bytes: A Systemic Review of Automated Bioacoustics Models Used to Detect, Classify and Monitor Insects
A.B Kohlberg, C.R. Myers & L.L. Figueroa
Journal of Applied Ecology
Generalizing mkFit and its Application to HL-LHC
G. Cerati, P. Elmer, P. Gartung, L. Giannini, M. Kortelainen, V. Krutelyov, S. Lantz, et al.
26th Intl. Conference on Computing in High Energy & Nuclear Physics
Glimmers from the Axiverse
N. Gendler, D.J.E. Marsh, L. McAllister & J. Moritz
arXiv
Gromov-Wasserstein Alignment: Statistical and Computational Advancements via Duality
Z. Goldfield
IZS 2024 Proceedings
Improving Tracking Algorithms with Machine Learning: A Case for Line-Segment Tracking at the High Luminosity LHC
J. Guiang, S. Krutelyov, M. Vourliotis, Y. Gu, et al.
arXiv
Increased Host Diversity Limits Bacterial Generalism But May Promote Microbe-Microbe Interactions
I.A. Holmes, J.G. Martinez-Fonseca, R. von May, B.A. Sealey, et al.
bioRxiv
Impact of a Potential Chlamydia Vaccine in the USA: Mathematical Modelling Analysis
M. Makhoul, H.H. Ayoub, S.E. Awad, H. Chemaitelly, & L.J. Abu-Raddad
BMJ Public Health
Local Structural Features Elucidate Crystallization of Complex Structure
M.M. Martirossyan, M. Spellings, H. Pan & J. Dshemuchadse
arXiv
MRI Denoising Using Pixel-Wise Threshold Selection
N. Srivastava, G.R. Sahoo, H.U. Voss, S.N Niogi, J.H. Freed & M. Srivastava
IEEE Access
Optimal Wavelet Selection for Signal Denoising
G.R. Sahoo, J.H. Freed & M. Srivastava
IEEE Access
r-VAE: Curvature Regularized Variational Autoencoders for Uncovering Emergent Low Dimensional Geometric Structure in High Dimensional Data
J.Z. Kim, N. Perin-Gilbert, E. Narmanli, P. Klein, C.R. Myers, et al.
arXiv
Resolution-Enhanced Optical Coherent Tomography
S.G. Adie & N. Leartprapun
U.S. Patent Application Publication
Revealing the Origin of Cooperative Adsorption of Chains on Nanoparticle Surfaces through Coarse-Grained Simulations
M.S. Alshammasi, P. Chen & F.A. Escobedo
ACS Central Science
Scaling HPC Education
S. Mehringer, M.P. Thomas, K. Cahill, C. Dey, D. Joiner, R. Knepper, J-P Navarro & J.H. Powell
Journal of Computational Science Education
16 Years of Change: PRO-DAIRY Dairy Profit Monitor
L. Koval & J. Karszes
PRO-DAIRY News
Statistical Inference with Regularized Optimal Transport
Z. Goldfeld, K. Kato, G. Rioux & R. Sadhu
Information and Inference
The NANOGrav 12.5 yr Data Set: Search for Gravitational Wave Memory
G. Agazie, Z. Arzoumanian, P.T. Baker, B. Becsy, et al.
The Astrophysical Journal
Urban Effect on Precipitation and Deep Convective Systems Over Dallas-Fort Worth
X. Zhou, F. Letson & S.C. Pryor
Journal of Geophysical Research: Atmospheres
What's in the Box? A Toolbox for Safe Deployment of Artificial Intelligence in Veterinary Medicine
P.S. Basran & R.B. Appleby
AVMA
Wind Shadows Impact Planning of Large Offshore Wind Farms
S.C. Pryor & R. J. Barthelmie
Applied Energy
2023
A Chromatin-Associated Regulator of RNA Polymerase III Assembly at tRNA Genes Revealed by Locus-Specific Proteomics
M.E. van Breugel, I. van Kruijsbergen, C. Mittal, et al.
bioRxiv
A Multi-Objective Paleo-Informed Reconstruction of Western US Weather Regimes over the Past 600 Years
R.S. Gupta, S. Steinschneider & P.M. Reed
Climate Dynamics
Assessing Shared Material Usage in the High Performance Computing (HPC) Education and Training Community
S. Mehringer, K. Cahill, J-P Navarro, S. Lathrop, C. Dey, M. Thomas & J.H. Powell
Journal of Computational Science Education
A Time for Every Purpose: Using Time-Dependent Sensitivity Analysis to Help Understand and Manage Dynamic Ecological Systems
W.H. Ng, C.R. Myers, S. McArt & S.P. Ellner
The American Naturalist
Campus Bridging in the Age of COVID-19
E. Coulter, R. Knepper, R. Reynolds, S. Bird & T.K. Samuel
PEARC '23
Combining Ultrasound Radiomics, Complete Blood Count, and Serum Biochemical Biomarkers for Diagnosing Intestinal Disorders in Cats Using Machine Learning
P.S. Basran, N. Shcherban, M. Forman, J. Chang, et al.
Veterinary Radiology & Ultrasound
Comparing New York Diary Farm Characteristics, Costs, and Performance Across Four Quartiles of Profitability in 2022
M.K MacKenzie & J. Karszes
ProDairy
Differentiating Unimodal and Multimodal Distributions in Pulsed Dipolar Spectroscopy Using Wavelet Transforms
A.S. Roy, J.H. Freed & M. Srivastava
Applied Magnetic Resonance
Direct Optimization of Fast-Ion Confinement in Stellarators
D. Bindel, M. Landreman & M. Padidar
Plasma Physics and Controlled Fusion
Effect of Particle Anisotropy on the Thermodynamics and Kinetics of Ordering Transitions in Hard Faceted Particles
A.K. Sharma & F.A. Escobedo
Journal of Chemical Physics
Final Results: National Survey on Education and Training Materials Repositories
K. Cahill, D. Joiner, S. Lathrop, S. Mehringer, J.P. Navarro & A. Weeden
Cornell University Technical Report
Hedgehog Signaling via its Ligand DHH Acts as Fate Determinant During Skeletal Muscle Regeneration
A.M. Norris, A.B. Appu, C.D. Johnson, et al.
Nature Communications
High-Latitude Stratospheric Aerosol Injection to Preserve the Arctic
W.R. Lee, D.G. MacMartin, D. Visioni, et al.
Earth's Future
Hyper-Enhanced Feature Learning System for Emotion Recognition
H.P. Fordson, X. Xing, K. Guo, X. Xu, A. Anderson & E. DeRosa
Signal Processing in Medicine & Biology
Simulation Study of Aberration-Diverse Optical Coherence Tomography for Deep Tissue Imaging
B. Shearer, S. Adie, S. Liu & M. Wu
Proceedings Optical Coherence Tomography
Intra- and Interobserver Assessments of Intestinal Wall Thickness and Segmentations from Transverse Sections of Feline Abdominal Ultrasound Images
J. Chang, I.R. Porter, M.A. Forman, N. Shcherban & P.S. Basran
Veterinary Radiology & Ultrasound
Monitoring Heritage at Risk: Caucasus Heritage Watch and the Armenian Monuments of Nagorno-Karabakh
A.T. Smith, L. Khatchadourian & I. Lindsay
Systemizing the Past
Policy-Value Alignment and Robustness in Search-based Multi-Agent Learning
N.A. Grupen, M. Hanion, A. Hao, D.D. Lee & B. Selman
arXiv
Predicting and Controlling Spillover in Multi-Species Disease Transmission Networks: Steady-State Analysis
W.H. Ng, C.R. Myers, S. McArt & S.P. Ellner
The American Naturalist
Projecting Future Energy Production from Operating Wind Farms in North America. Part I: Dynamical Downscaling
S.C. Pryor, J.J. Coburn, R.J. Barthelmie & T.J. Sheperd
Journal of Applied Meteorology and Climatology
Projecting Future Energy Production from Operating Wind Farms in North America. Part II: Statistical Downscaling
J. Coburn & S.C. Pryor
Journal of Applied Meteorology and Climatology
Quantum Neural Estimation of Entropies
Z. Goldfeld, D. Patel, S. Sreekumar & M.M. Wilde
arXiv
Recurrent Activity in Neuronal Avalanches
T. Salners, K.E. Avila, B. Nicholson, C.R. Myers, J. Beggs & K.A. Dahmen
Nature Scientific Reports
Robust Estimation Under the Wasserstein Distance
S. Nietert, R. Cummings & Z. Goldfeld
arXiv
Speeding up the CMS Track Reconstruction with a Parallelized and Vectorized Kalman-Filter-based Algorithm during the LHC Run 3
S. Berkman, G. Cerati, P. Elmer, et. al.
arXiv
Stochastic Watershed Model Ensembles for Long-Range Planning: Verification and Validation
G. Shabestanipour, Z. Brodeur, W.H. Farmer, S. Steinschneider, R.M. Vogel & J.R. Lamontagne
Water Resources Research
Targeted Discovery of Low-Coordinated Crystal Structures via Tunable Particle Interactions
H. Pan & J. Dshemuchadse
ACS Nano
tdsa: An R Package for Time-Dependent Sensitivity Analysis
W.H. Ng, C.R. Myers, S.H. McArt & S. P. Ellner
Methods in Ecology and Evolution
The I-WRF Framework: Containerized Weather Modeling, Validation, and Verification
R. Knepper, S.C. Pryor, B. Wineholt, X. Zhou, M. Burkovsky & J. Lee
PEARC '23
The NANOGrav 12.5-year Data Set: Bayesian Limits on Gravitational Waves from Individual Supermassive Black Hole Binaries
Z. Arzoumanian, P.T. Baker, L. Blecha, H. Blumer, A. Brazier, et. al.
arXiv
Unsupervised Analysis of Small Molecule Mixtures by Wavelet-Based Super-Resolved NMR
R.A. Sinha & M. Srivastava
MDPI
U.S. Universities Are Not Succeeding in Diversifying Faculty
J.N. Matias, N.A. Lewis & E.C. Hope
Nature
Use of Accounting Concepts to Study Research: ROI in XSEDE, a US Cyberinfrastructure Service
C.A. Stewart, C.M, Costa, J.A. Wernert, W. Snapp-Childs, et. al.
Scientometrics
2022
A High-Order Hybrid Flow Solver for the Simulation of Nonlinear Internal Waves in Long Complex Domains
T. Diamantopoulos
Cornell University PhD Dissertation
A Tight Reverse Minkowski Inequality for the Epstein Zeta Function
Y. Eisenberg, O. Regev & N. Stephens-Davidowitz
arXiv
Assessing Gender Bias in Particle Physics and Social Science Recommendations for Academic Jobs
R.H. Bernstein, M.W. Macy, W.M. Williams, C.J. Cameron, S.C. Williams-Ceci & S.J. Ceci
Social Sciences
Autonomous Materials Synthesis Via Hierarchical Active Learning of Nonequilibrium Phase Diagrams
S. Ament, M. Amsler, D. R. Sutherland, M-C. Chang, D. Guevarra, A.B. Connolly, J.M. Gregoire, M.O. Thompson, C. P. Gomes & R.B. Van Dover
Science Advances
Bias Correction of Hydrologic Projections Strongly Impacts Inferred Climate Vulnerabilities in Institutionally Complex Water Systems
K. Malek, P. Reed, H. Zeff, A. Hamilton, M. Wrzesien, N. Holtzman, S. Steinschneider, J. Herman & T. Pavelsky
Journal of Water Resources Planning and Management
Collaborative Experience Between Scientific Software Projects Using Agile Scrum Development
A.L. Baxter, S.Y. BenZvi, W. Bonivento, A. Brazier, et al.
Journal of Software: Practice and Experience
Delta Thermal Radiomics: An Application in Dairy Cow Teats
P.S. Basran, C. DiLeo, I.R. Porter & M. Wieland
JDS Communications
Electroconvection Near an Ion-Selective Surface with Butler-Volmer Kinetics
G. Li, A. Townsend, L.A. Archer & D.L. Koch
Journal of Fluid Mechanics
Enabling Dynamics Studies of Proteins at Low Concentrations Using Electron Spin Resonance
W. Bekerman & M. Srivastava
Biophysical Journal
Exploring ENSO-Induced Anomalies over North America in Historical and Future Climate Simulations that use HadGEM2-ESM Output to Drive WRF
T. Shepherd, J.J. Coburn, R.J. Barthelmie & S.C. Pryor
Climate
Exponentially Small Cosmological Constant in String Theory
M. Demirtas, M. Kim, L. McAllister, J. Moritz & A. Rios-Tascon
Physical Review Letters
GPTuneBand: Multi-task and Multi-fidelity Autotuning for Large-scale High Performance Computing Applications
X. Zhu, Y. Liu, P. Ghysels, D. Bindel & X.S. Li
Berkeley Lab Report
Hepatitis C Virus Among Blood Donors and General Population in Middle East and North Africa: Meta-Analyses and Meta-Regressions
S. Mahmud, H. Chemaitelly, A.S. Alaama, J.G. Hermez & L. Abu-Raddad
World Journal of Meta-Analysis
Limit Distribution Theory for Smooth p-Wasserstein Distances
Z. Goldfeld, K. Kato, S. Nietert & G. Rioux
arXiv
MultiSector Dynamics: Scientific Challenges and a Research Vision for 2030
P.M. Reed, A. Hadjimichael, R.H Moss, et al.
DOE Office of Science
Observed and Projected Scaling of Daily Extreme Precipitation with Dew Point Temperatures at Annual and Seasonal Scales across the Northeastern United States
S. Steinschneider & N. Najibi
Journal of Hydrometeorology
Occurrence of low-level jets over the Eastern U.S. coastal zone at heights relevant to wind energy
J.A. Aird, R.J. Barthelmie, T.J. Shepherd & S.C. Pryor
Energies
Ordering Operations for Generic Replicated Data Types Using Version Trees
N. Saquib, C. Krintz & R. Wolski
Proceedings of 9th Workshop on Principles and Practice of Consistency for Distributed Data
Pathogen Transport Amplifies or Dilutes Disease Transmission Depending on the Host Dose-Response Relationship
W.H. Ng, C.R. Myers, S.H. McArt & S.P. Ellner
Ecology Letters
Probabilistic Projections of Baseline Twenty-First Century CO2 Emissions Using a Simple Calibrated Integrated Assessment Model
V. Srikrishnan, Y. Guan, R.S.J. Tol & K. Keller
Climatic Change
Protection Against the Omicron Variant from Previous SARS-CoV-2 Infection
H.N. Altarawneh, H. Chemaitellyl, M.R. Hasan, H.H. Ayoub, et al..
New England Journal Of Medicine
Reliance on Science by Inventors: Hybrid Extraction of In-Text Patent-to-Article Citations
M. Marx & A. Fuegi
Journal of Economics & Management Strategy
SCiMMA Hopscotch: Performant, Robust, and Secure Messaging Cyberinfrastructure for Multi-Messenger Astrophysics
A. Brazier, B. Cousins, S. Elsayed, et al.
Bulletin of the American Astronomical Society
Soft Matter Crystallography--Complex, Diverse, and New Crystal Structures in Condensed Materials on the Mesoscale
Julia Dshemuchadse
Journal of Applied Physics
Stability of an Air-Water Mixing Layer: Focus on the Confinement Effect
C. Bozonnet, J-P. Matas, G. Balarac & O. Desjardins
Journal of Fluid Mechanics
The International Pulsar Timing Array Second Data Release: Search for an Isotropic Gravitational Wave Background
J. Antoniadis et al.
arXiv
The Project ArAGATS Kasakh Valley Archaeological Survey, Armenia: Report of the 2014-2017 Seasons
I. Lindsay, A.F. Green, M.E. Marshall, R. Badalyan, A. Cromartie, K. Azalysan, L. Agihkyan, L. Khatchadourian, A. Mkrtchyan & A.T. Smith
American Journal of Archaeology
The Unmet Potential of Artificial Intelligence in Veterinary Medicine
P.S. Basran & R.B. Appleby
American Journal of Veterinary Research
Wakes In and Between Very Large Offshore Arrays
S.C. Pryor, R.J. Barthelmie, et al.
Journal of Physics
2021
A global assessment of extreme wind speeds for wind energy applications
S.C. Pryor, R.J. Barthelmie
Nature Energy
Agile Scrum Development in an ad hoc Software Collaboration
A.L. Baxter, S.Y. BenZvi, W. Bonivento, A. Brazier, et al.
arXiv
Aristotle Cloud Federation: Container Runtimes Technical Report
P.Z. Vaillancourt, B. Wineholt, T.J. Shepherd, S.C. Pryor, J. Lantz, R. Knepper, R. Wolski, C.R. Myers, B. Trumbore, R. Reynolds, J. Sprouse, D. Lifka
arXiv
Astrophysics Milestones for Pulsar Timing Array Gravitational-wave Detection
N.S. Pol, S.R. Taylor, L.Z Kelley, S.J. Vigeland, J. Simon, S. Chen, Z. Arzoumanian, P.T. Baker, B. Becsy, A. Brazier et. al.
The Astrophysical Journal Letters
Bias Decomposition and Estimator Performance in Respondent-Driven Sampling
A.D. Sirianni, C.J. Camaeron, Y. Shi & D.D. Heckathorn
Social Networks
Constraining Galaxy Halos from the Dispersion and Scattering of Fast Radio Bursts and Pulsars
S.K. Ocker, J.M. Cordes & S. Chatterjee
The Astrophysical Journal
Containerized Application Kernels on Google Cloud
N.A. Simakov, S. Guercio, A. Bruno, M.D. Jones
Aristotle Cloud Federation Technical Report
Extraction of Weak Spectroscopic Signals with High Fidelity: Examples from ESR
M. Srivastava, B. Dzikovski & J.H. Freed
Journal of Physical Chemistry
Investigating the Stability and Accuracy of a Classical Mapping Variable Hamiltonian for Nonadiabatic Quantum Dynamics
E. Eklund & N. Ananth
Regular and Chaotic Dynamics Journal
Investor short-termism and real investment
D.M Rosch, A. Subrahmanyam, M.A. van Dijk
Nature Energy
Parallelizing the unpacking and clustering of detector data for reconstruction of charged particle tracks on multi-core CPUs and many-core GPUs
G. Cerati, P. Elmer, B. Gravelle, M. Kortelainen, V. Krutelyov, S. Lantz, et al.
Proceedings of CTD
Performance of U.S. Scientific Research Cyberinfrastructure: Structural and Relational Factors for Usage
Y.-C. Chen, X. Cheng & R. Knepper
International Conference on Digital Government Research
Searching for Gravitational Waves from Cosmological Phase Transitions with the NANOGrav 12.5-Year Dataset
Z. Arzoumanian, P.T. Baker, H. Blumer, B. Becsy, A. Brazier, et al.
arXiv
Sparta: A heat-budget-based scheduling framework on IoT edge systems
M. Zhang, C. Krintz, R. Wolski
International Conference on Edge Computing
The NANOGrav 11 year data set: Limits on supermassive black hole binaries in galaxies within 500Mpc
Z. Arzoumanian, P.T. Baker, A. Brazier, et al.
arXiv
The predicted metabolic function of the gut microbiota of Drosophila melanogaster
N.Y.D. Ankrah, B.E. Barker, J. Song, C. Wu, J.G. McMullen II, A.E. Douglas
bioRxiv
WRF-simulated low-level jets over Iowa: characterization and sensitivity studies
J.A. Aird, R. Barthelmie, T.J. Shepherd, S.C. Pryor
Wind Energy Science
2020
Asset pricing: A tale of night and day
T. Hendershott, D. Livdan, D. Rosch
Journal of Financial Economics
Detecting gravitational scattering of interstellar objects using pulsar timing
R.J. Jennings, J.M. Cordes, S. Chatterjee
The Astrophysical Journal
Fair schedule for deadline-driven, resource-constrained, multi-analytics workloads
S. Dimopoulos, C. Krintz, R. Wolski
International Conference on Computing, Networking and Communications
Individual specialization and multihost epidemics: disease spread in plant-pollinator networks
S.P. Ellner, W.H. Ng, C.R. Myers
The American Naturalist
Modelling hail and convective storms with WRF for wind energy applications
F. Letson, T.J. Shepherd, R.J. Barthelmie, S.C. Pryor
Journal of Physics
Multistate ring polymer instantons and nonadiabatic reaction rates
S. Ranya, N. Ananth
arXiv
NanoLambda: Implementing Functions as a Service at all resource scales for the Internet of Things
G. George, F. Bakir, R. Wolski, C. Krintz
Fifth ACM/IEEE Symposium on Edge Computing
Reconstruction of charge particle tracks in realistic detector geometry using a vectorized and parallelized kalman filter algorithm
G. Cerati, P. Elmer, B. Gravelle, M. Kortelainen, V. Krutelyov, S. Lantz, et al.
arXiv
Reproducible and portable workflows for scientific computing and HPC in the cloud
P. Vaillancourt, B. Wineholt, B. Barker, P. Deliyannis, J. Zheng, A. Suresh, A. Brazier, R. Knepper, R. Wolski
PEARC'20: Practice and Experience in Advanced Research Computing
SCIMMA: A framework for data analysis discovery in multi-messenger astrophysics
A. Brazier, W. Anderson, P. Brady, et al.
Bulletin of the American Astronomical Society
Self-scaling clusters and reproducible containers to enable scientific computing
P.Z. Vaillancourt, J.E. Coulter, R. Knepper, B. Barker
arXiv
Sensitivity of wind turbine array downstream effects to the parameterization used in WRF
T.J. Shepherd, R.J. Barthelmie, S.C. Pryor
Journal of Applied Meteorology and Climatology
Speeding up particle track reconstruction using a parallel Kalman filter algorithm
S. Lantz, K. McDermott, M. Reid, D. Riley, P. Wittich, et al.
Journal of Instrumentation
Syntrophic splitting of central carbon metabolism in host cells bearing functionally different symbiotic bacteria
N.Y.D. Ankrah, R.A. Wilkes, F.Q. Zhang, D. Zhu, T. Kaweesi, L. Aristilde, A.E. Douglas
The ISME Journal
Water pathways: An open source stochastic simulation system for integrated water supply portfolio management and infrastructure investment planning
B.C. Trindade, D.F. Gold, P.M. Reed, H.B. Zeff, G.W. Characklis
Environmental Modelling & Software
"Wind Theft" from onshore wind turbine arrays: Sensitivity to wind farm parameterization and resolution
S.C. Pryor, T.J. Shepherd, P.J.H. Volker, A.N. Hahmann, R.J. Barthelmie
Journal of Applied Meteorology and Climatology
2019
A scalable system for executing and scoring K-means clustering techniques and its impact on applications in agriculture
N. Golubovic, C. Krintz, R. Wolski
International Journal of Big Data Intelligence
Analyzing AWS spot instance pricing
G. George, R. Wolski, C. Krintz, J. Brevik
2019 IEEE Conference on Cloud Engineering
Assessment of non-financial returns on cyberinfrastructure: A survey of current methods
C.A. Stewart, A. Apon, D.Y. Hancock, T. Furlani, A. Sill, J. Wernert, D. Lifka, et al.
HARC'19
Beyond campus bridging: A retrospective of cyberinfrastructure integration efforts
J.E. Coulter, R. Knepper, R. Reynolds, J. Sprouse, S. Bird
PEARC '19
Complete genome sequences of Xanthomonas axonopodisc p.v. glycines isolates from the United States and Thailand reveal conserved transcription activator
S.C.D. Carpenter, L. Kladsuwan, S.W. Han, S. Prathuangwong, A.J. Bogdanove
Genome Biology and Evolution
Computational sustainability: Computing for a better world and a sustainable future
C. Gomes, T. Dietterich, C. Barrett, J. Conrad, B. Dilkina, S. Ermon, F. Fang, et al.
Communications of the ACM
Cyberinfrastructure, cloud computing, science gateways, visualization, and cyberinfrastructure ease of use
C.A. Stewart, R. Knepper, M.R. Link, M. Pierce, E. Wernert, N. Wilkins-Diehr
Encyclopedia of Information Science and Technology
Cyberinfrastructure requirements to enhance Multi-Messenger Astrophysics
P. Chang, G. Allen, W. Anderson, F. Bianco, J. Bloom, P. Brady, A. Brazier, et al.
Astro2020
Data repair for distributed, event-based IoT applications
W.T. Lin, F. Bakir, C. Krintz, M. Mock
Proceedings of the 13th ACM International Conference on Distributed and Event-Based Systems
Devices-as-services: Rethinking scalable service architecture for the internet of things
F. Bakir, R. Wolski, C. Krintz, G. Ramachandran
Proceedings of the 2019 USENIX Conference
Emergent regularities and scaling in armed conflict data
E.D. Lee, B.C. Daniels, C.R. Myers, D.C. Krakauer, J.C. Flack
arXiv
Extending XSEDE innovations to campus cyberinfrastructure - The XSEDE national integration toolkit
E. Coulter, R. Reynolds, J. Sprouse, R. Knepper
Journal of Computational Science Education
Improving the accuracy of outdoor temperature prediction by IoT devices
N. Golubovic, R. Wolski, C. Krintz, M. Mock
IEEE Conference on IoT
Mandrake: Implementing durability for edge clouds
K. Carson, J. Thomason, R. Wolski, C. Krintz, M. Mock
IEEE International Conference on Edge Computing
Mining online training log data
S. Mehringer, C.R. Myers, J. Houchins, L. Rivera
PEARC '19
NANOGrav education and outreach: Growing a diverse and inclusive collaboration for low-frequency gravitational wave astronomy
T. Dolch, P.T. Baker, H. Blumer, A. Brazier, S. Chatterjee, et al.
Astro2020
RADAR-derived precipitation climatology for wind turbine blade leading edge erosion
F. Letson, R.J. Barthelmie, S.C. Pryor
Wind Energy Science
Red Cloud and Aristotle: campus clouds and federations
R. Knepper, S. Mehringer, A. Brazier, B. Barker, R. Reynolds
HARC'19
Search space representation and reduction methods to enhance multiobjective water supply monitoring design
F. Bode, P. Reed, S. Reuschen, W. Nowak
Water Resources Research
Seneca: Fast and low cost hyperparameter search for machine learning methods
M. Zhang, C. Krintz, R. Wolski, M. Mock
IEEE Cloud 2019
Speeding up particle track reconstruction in the CMS detector using a vectorized and parallelized Kalman filter algorithm
G. Cerati, P. Elmer, B. Gravelle, M. Kortelainen, V. Krutelyov, S. Lantz, et al.
arXiv
Tick size, liquidity for small and large orders, and price informativeness: Evidence from the Tick Size Pilot Program
K.H. Chung, A.J. Lee, D. Rosch
Journal of Financial Economics
Wind farm wakes simulated using WRF
S.C. Pryor, T.J. Shepherd, R. J. Barthelmie, A.N. Hahmann, P. Volker
Journal of Physics
2018
A survey of analytical methods for inclusion in a new energy-water nexus knowledge discovery framework
M. Allen, S.Z.A Mohammed, V. Chandola, et al.
Big Earth Data Journal
CENTAURUS: A cloud service for K-means clustering
N. Golubovic, A. Gill, C. Krintz, R. Wolski
IEEE 15th Conference on Dependable, Automatics & Secure Computing
Creating effective online training videos from live training event recordings
S. Mehringer, T. Maiden, L. Rivera, J. Urbanic
PEARC '18
Design and implementation of a secure computing environment for analysis of sensitive data at an academic medical center
P.R. Oxley, J. Ruffing, T.R. Campion, T.R. Wheeler, C.L. Cole
AMIA Annual Symposium Proceedings
Detecting function dependencies across clouds
H. Jayathilaka, C. Krintz, R. Wolski
IEEE Transactions on Cloud Computing
Downstream effects from contemporary wind turbine deployments
S.C. Pryor, R.J. Barthelmie, A. Hahmann, T. Sheperd, P. Volker
Journal of Physics: Conf. Series 1037
Federated XDMoD to monitor affiliated computing resources
J. Sperhac, B.D. Plessinger, J.T. Palmer, et al.
2018 IEEE International Conference on Cluster Computing
Functional analysis of African Zanthomonas oryzae pv. oryzae TALomes reveals new susceptibility gene in bacterial leaf blight of rice
T.T. Tran, A.L. Perez-Quintero, I Wonni, et al.
PLOS Pathogens
Inter-annual variability of wind climates and wind turbine annual energy production
S.C. Pryor, T. J. Shepherd, R.J. Barthelmie
Wind Energy Science
Parallelized Kalman-filter-based reconstruction of particle tracks on many-core architectures
G. Cerati, P. Elmer, S. Krutelyov, S. Lantz, et al.
Journal of Physics: Conference Series
Probabilistic guarantees of execution duration for Amazon spot instances
R. Wolski, J. Brevik, R. Chard, K. Chard
Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis
The NANOGrav 11-year data set: High-precision timing of 45 millisecond pulsars
Z. Arzoumanian, A. Brazier, S. Burke-Spolaor, S. Chamberlin, S. Chatterjee, et al.
The Astrophysical Journal
Tracing function dependencies across clouds
W.T. Lin, C. Krintz, R. Wolski
IEEE 11th International Conference on Cloud Computing
Zen and the art of parameter estimation in systems biology
C.R. Myers
Invited chapter in Systems Immunology: An Introduction to Modeling Methods for Scientists
2017
A Gene Encoding Maize Caffeoyl-CoA O-methyltransferase Confers Quantitative Resistance to Multiple Pathogens
Q. Yang, Y. He, M. Kabahuma, et al.
Nature Genetics
Cooperative Metabolism in a Three-Partner Insect-Bacterial Symbiosis Revealed by Metabolic Modeling
N. Ankrah, J. Luan, A. Douglas
Journal of Bacteriology
Microbiome and Metabolic Disease: Revisiting the Bacterial Phylum Bacteroidetes
E.L. Johnson, S. Heaver, W. Walters, R. Ley
Journal of Molecular Medicine
The Effect of Increasing Numbers of Repeats on TAL Effector DNA Binding Specificity
F. Rinaldi, L. Doule, B. Stoddard, A. Bogdanove
Nucleic Acids Research
The NANOGrav Nine-year Data Set: Measurement and Analysis of Variations in Dispersion Measures
M.L. Jones, M.A. McLaughlin, M.T. Lam, J.M. Cordes, L. Levin, S. Chatterjee, et al.
The Astrophysical Journal
2016
A Diagnostic Assessment of Evolutionary Algorithms for Multi-Objective Surface Reservoir Control
S. Salazar, P. Reed, J. Herman, M. Giuliani, A. Castelletti
Advances in Water Resources
A Repeating Fast Radio Burst
L. Spitler, P. Scholz, J. Hessels, S. Bogdanov, A. Brazier, et al.
Nature
A Transcription Activator-like Effector from Xanthomonas oryzae pv. oryzicola Elicits Dose-Dependent Resistance in Rice
A. Hummel, K. Wilkins, L., Wang, R. Cernadas, A. Bogdanove
Molecular Plant Pathology
Effect of Pseudopod Extensions on Neutrophil Hemodynamic Transport
T. Kim, D. Puggioni, Y. Yuan, et al.
Cell Molecular Bioengineering
Polar Metals by Geometric Design
T. Kim, D. Puggioni, Y. Yuan, et al.
Nature
State Space Path Integrals for Electronically Nonadiabatic Reaction Rates
J. Duke, N. Ananth
Faraday Discussions
The NANOGrav Nine-Year Data Set: Limits on the Isotropic Stochastic Gravitational Wave Background
Z. Arzoumanian, A. Brazier, S. Burke-Spolaor, S. Chamberlin, S. Chatterjee, B. Christy, J. Cordes, et. al.
The Astrophysical Journal
2015
A Randomized Trial of Iron-Biofortified Pearl Millet in School Children in India
J. Finkelstein, S, Mehta, S. Udipi, P. Ghugre, S. Luna, M. Wenger, L. Murray-Kolb, E. Przybyszewski, J. Haas
Journal of Nutrition
A Robust and Efficient Method for Estimating Enzyme Complex Abundance and Metabolic Flux from Expression Data
B. Barker, N. Sadagopan, Y. Wang et al.
Computational Biology and Chemistry
An Open Source Framework for Many-Objective Robust Decision Making
D. Hadka, J. Herman, P. Reed, K. Keller
Environmental Modeling & Software
Dynamic Epistasis under Varying Environmental Perturbations
B. Barker, L. Xu, Z. Gu
PLOS
Dynamically Consistent Method for Mixed Quantum-Classical Simulations: A Semi-Classical Approach
S. Antipov, Z. Ye, N. Ananth
Journal of Chemical Physics
Educating Intuition: Reducing Risky Decisions Using Fuzzy-Trace Theory
V. Reyna, R. Weldon, B. McCormick
Current Directions in Psychological Science
Host Genetic Variation Impacts Microbiome Composition Across Human Body Sites
R. Blekhman, J. Goodrich, K. Huang, Q. Sun, R. Bukowski, J. Bell, T. Spector, A. Keinan, R. Ley
Genome Biology
Incorporating Interactive Compute Environments into Web-Based Training Materials Using the Cornell Job Runner Service
S. Mehringer, A. Birkland
XSEDE '15 Proceedings
Jetstream: A Distributed Cloud Infrastructure for Under-Resourced Higher Education Communities
J. Fischer, S. Tuecke, I. Foster, C. Stewart
Kalman Filter Tracking on Parallel Architectures
G. Cerati, P. Elmer, S. Lantz, K. McDermott, D. Riley, M. Tadel, P. Wittich et al.
Journal of Physics: Conference Series 664
Learning from FITS: Limitations in Use in Modern Astronomical Research
B. Thomas, T. Jenness et al.
Astronomy and Computing
Linear Magnetoelectricity at Room Temperature in Perovskite Superlattices by Design
S. Ghosh, H. Das, C. Fennie
Physical Review B
Recognizing Landmarks in Large-Scale Social Image Collections
D. Crandall, Y. Li, S. Lee, D. Huttenlocher
Short-Time Dynamics of pH-Dependent Conformation and Substrate Binding in the Active Site of Beta-Glucosidases: A Computational Study
D. Flannelly, T. Aoki, L. Aristilde
Journal of Structural Biology
Simulating Excited State Dynamics in Systems with Multiple Avoid Crossings Using Mapping Variable Ring Polymer Molecular Dynamics
J. Duke, N. Ananth
Journal of Physical Chemistry
Single Molecule Real-Time Sequencing of Zanthomonas Oryzae Genomes Reveals a Dynamic Structure and Complete TAL Effector Gene Relationships
N. Booher, S. Carpenter, R. Sebra, L. Wang, S. Salzberg, J. Leach, A. Bogdanove
Microbial Genomics
Supercloud: Opportunities and Challenges
J. Qin, S. Zhiming, S. Weijia, R. van Renesse, H. Weatherspoon
ACM SIGOPS Operating Systems Review
The Future of Water Resources Systems Analysis: Toward a Scientific Framework for Sustainable Water Management
C. Brown, J. Lund, X. Cai, P. Reed, et al.
Water Resources Research
The NANOGrav Nine-Year Data Set: Limits on the Isotropic Stochastic Gravitational Wave Background
Z. Arzoumanian, A. Brazier et al.
arXiv
Timing of Five Millisecond Pulsars Discovered in the PALFA Survey
P. Scholz, V.M. Kaspi, A.G. Lyne, B.W. Stappers, S. Bogdanov, J.M. Cordes, et al.
arXiv
2014
Advances in Genome-Scale Modeling Applied to Expression-Based Flux Estimation and Epistasis Prediction
B. Barker
eCommons@Cornell
Code-Assisted Discovery of TAL Effector Targets in in Bacterial Leaf Streak of Rice
R. Cernadas et al.
PLOS Pathogens
Elastic Strain Engineering of Ferroic Oxides
D. Schlom, L. Chen, C. Fennie et al.
Materials Research Society
Estimating the Number of Species in Microbial Diversity Studies
J. Bunge, A. Willis, F. Walsh
Annual Review of Statistics and Its Applications
Financing of Innovation Strategies in Emerging Economies
A. Leiponen, S. Poczter
Social Science Research Network
Large-Scale Brain Dynamics in Disorders of Consciousness
N. Schiff, T. Nauvel, J. Victor
Current Opinion in Neurobiology
Many-Objective Reservoir Policy Identification and Refinement to Reduce Policy Inertia and Myopia in Water Management
M. Giuliani, J. Herman, A. Castelletti, P. Reed
Water Management Resources
Methods for Creating XSEDE Compatible Clusters
J. Fischer, C. Stewart, B Hallock, R. Knepper, R. Alvord, V. Hazlewood, M. Standish, D. Lifka
XSEDE '14 Conference
NANOGrav Limits on Gravitational Waves from Individual Supermassive Black Hole Binaries in Circular Orbit
Z. Arzoumanian, A. Brazier, S. Burke-Spolaor, S.J. Chamberlin, S. Chatterjee, J.M. Cordes, et al.
arXiv
Numerical Study of Collisional Particle Dynamics in Cluster-Induced Turbulence
J. Capecelatro, O. Desjardins, R. Fox
Journal of Fluid Mechanics
Smart Farmers, Happy Cows
K. Klein
Cornell's EZRA Magazine: Julio Giordano
The I-Tevl Nuclease and Linker Domains Contribute to the Specificity of Monomeric TALENs
B. Kleinstiver, L. Wang, J. Wolfs, T. Kolaczyk, b. McDowell, X. Wang, C. Schild-Poulter, A. Bogdanove, D. Edgell
Genes, Genomes, Genetics Journal
The Low-Lying Electronic States of Pentacene and Their Roles in Singlet Fission
T. Zeng, R. Hoffman, N. Ananth
Journal of the American Chemical Society
Traditional Tracking with Kalman Filter on Parallel Architectures
G. Cerati, P. Elmer, S. Lantz, I. MacNeill, K. McDermott, D. Riley, M. Tadel, P. Wittich, F. Wuerthwein, A. Yagil
Submitted Proc. 16th Intl. Workshop on Adv. Computing & Analysis Techniques in Physic Research
TRAIL-Coated Leukocytes that Kill Cancer Cells in the Circulation
M. Mitchell, E. Wayne, K. Rana, C. Schaffer, M. King
Proceedings of the National Academy of Sciences
2013
A Model of Electrophysiological Heterogeneity in Periglomerular Cells
P. Sethupathy, D. Rubin, G. Li, T. Cleland
Frontiers in Computational Neuroscience
A Two-Layer Biophysical Model of Cholinergic Neuromodulation in Olfactory Bulb
G. Li, T. Cleland
Journal of Neuroscience
An Euler-Lagrange Strategy for Simulating Particle-Laden Flows
J. Capecelatro, O. Desjardins
Journal of Computational Physics
Assessing the Natural Rate of Unemployment
J. Abowd, T. Goel, L. Vilhuber
Cornell University Technical Report
Bilayer Thickness Mismatch Controls Domain Size in Model Membranes
F. Heberle, R. Petruzielo, J. Pan, P. Drazba, N. Kucerka, R. Standaert, G. Feigenson, J. Katsaras
Journal of the American Chemical Society
Bulk Coupling of Polarization and Magnetism in the Hexagonal Ferrites
H. Das, A. Wysocki, C. Fennie
arXiv.org
Computational and Experimental Models of Cancer Cell Response to Fluid Shear Stress
M. Mitchell, M. King
Frontiers in Oncology
Cornell Log Analysis and Monitoring Project (CLAMP)
M. Padula, L. Walle
Cornell University Technical Report
Data Management of Confidential Data
C. Lagoze, W. Block, J. Williams, J. Abowd, L. Vilhuber
International Journal of Digital Curation
Evaluating Cloud Computing Techniques for Smart Power Grid Design Using Parallel Scripting
Proceedings of IEEE/ACM CCGrid 2013
Hybrid and Nonhybrid Lipids Exert Common Effects on Membrane Raft Size and Morphology
F. Heberle, M. Doktorova, S. Goh, R. Standaert, J. Katsaras, G. Feigenson
Journal of the American Chemical Society
Kenneth Geddes Wilson, 1936-2013: An Appreciation
L. Kadanoff
arXiv.org
Large-Scale Parallel Simulations of Turbulent Combustion using Combined Dimension Reduction and Tabulation of Chemistry
V. Hiremath, S. Lantz, H. Wang, S. Pope
Proceedings of the Combustion Institute
Multiscale Model of Platelet Translocation and Collision
W. Wang, N. Mody, M. King
Journal of Computational Physics
Science with an Energy Recovery Linac
Editors: D. Bilderback, J. Brock, E. Fontes, G. Hoffstaetter
Cornell University Report
Survey of Software for Fitting Capture-Recapture Models
J. Bunge
Computational Statistics
Toward a Reliable, Secure and Fault Tolerant Smart Grid State Estimation in the Cloud
K. Maheshwari, M. Lim, L. Wan, K. Birman, R. van Renesse
Proceedings of IEEE/PES ISGT 3013
Why There Are So Few Perovskite Ferroelectrics?
N. Benedek, C. Fennie
The Journal of Physical Chemistry
XSEDE Cloud Survey Report
D. Lifka, I. Foster, S. Mehringer, M. Parashar, P. Redfern, C. Stewart, S. Tuecke
EDUCAUSE and XSEDE Achive
2012
A Proposed Solution to the Archiving and Curation of Confidential Scientific Inputs
J. Abowd, L. Vilhuber, W. Block
Privacy in Statistical Databases 2012
Assessing the Accuracy and Power of Population Genetic Inference from Low-Pass Next-Generation Sequencing Data
J. Crawford, B. Lazzaro
Frontiers in Evolutionary and Population Genetics
Computationally-Efficient and Scalable Parallel Implementation of Chemistry in Simulations of Turbulent Combustion
V. Hiremath, S. Lantz, H. Wang, S. Pope
Combustion and Flame
Did the Housing Price Bubble Clobber Local Labor Markets When It Burst?
J. Abowd, L. Vilhuber
American Economic Review Papers and Proceedings
Electrical Properties of Improper Ferroelectrics from First Principles
M. Stengel, C. Fennie, P. Ghosez
Physical Review B
Energy Recovery Linac 2012 Report
G. Hoffstaetter, S. Gruner, M. Tigner, et. al.
Cornell Technical Report
Estimating Population Diversity with CatchAll
J. Bunge, L. Woodard, D. Bohning, J. Foster, S. Connolly, H, Allen
Bioinformatics
Global Mapping of Translation Initiation Sites in Mammalian Cells at Single-Nucleotide Resolution
S. Lee, B. Liu, S. Lee. S. Huang, B. Shen, S. Qian
Proceedings of the National Academy of Science
High-Throughput Single Nucleotide Polymorphism Genotyping for Breeding Applications in Rice using the BeadXpress Platform
M. Thompson, K. Zhao, M. Wright, et. al.
Molecular Breeding
HOM Studies of the Cornell ERL Prototype Cavity in a Horizontal Test Cryomodule
N. Valle, M. Biling, G. Hoffstaetter, C. Mayes
Proceedings of IPAC2012
Large-Scale Parallel Simulations of Turbulent Combustion using Combined Dimension Reduction and Tabulation of Chemistry
V. Hiremath, S. Lantz, H. Wang, S. Pope
Proceedings of the Combustion Institute
Measuring the Microbiome: Perspectives on Advances in DNA-based Techniques for Exploring Microbial Life
J. Foster, J. Bunge, J. Gilbert, J. Moore
Briefings in Bioinformatics
Minimum Requirements for Detecting a Stochastic Gravitational Wave Background Using Pulsars
J. Cordes, R. Shannon
Astrophysics Journal
Multiwavelength Constraints on Pulsar Populations in the Galactic Center
R. Wharton, S. Chatterjee, J. Cordes, J. Deneva, T. Lazio
Astrophysics Journal
On-Center/Inhibitory-Surround Decorrelation via Intraglomerular Inhibition in the Olfactory Bulb Glomerular Layer
T. Cleland, C. Linster
Frontiers in Integrative Neuroscience
Optimal Control of Financial Contagion
H. Amini, A. Minca
Social Sciences Research Network
Polar Octahedral Rotations: A Path to New Multifunctional Materials
N. Benedek, A. Mulder, C. Fennie
Journal of Solid State Chemistry
The Xen-Blanket: Virtualize Once, Run Everywhere
D. Williams, H. Jamjoom, H. Weatherspoon
Proceedings of 7th ACM Eurosys
Towards Unrestricted Public Use Business Microdata: The Synthetic Longitudinal Business Database
S. Kinney, J. Reiter, A. Reznek, J. Miranda, R. Jarmin, J. Abowd
International Statistic Review
Twenty Questions with Noise: Bayes Optimal Policies for Entropy Loss
B. Jedynak, P. Frazier, R. Sznitman
Journal of Applied Probability
2011
A Case Study on the Use of Adapt-N
J. LaGioia, H. van Es, J. Melkonian, B. Moebius-Clune, D. Shearing
Computational Agriculture Institute Case Study
Absence of Tec Family Kinases Interleukin-2 Inducible T Cell Kinase and Bruton�s Tyrosine Kinase Severely Impairs Fc EpsilonRI-Dependent Mast Cell Responses
A. Iyer, J. Morales, W. Huang, F. Ojo, G.Ning, E. Wills, J. Baines, A. August
Journal of Biological Chemistry
Computational and Experimental Analysis Reveals a Requirement for Eosinophil-Derived IL-13 for the Development of Allergic Airway Responses in C57BL/6 Mice
E. Walsh, J. Thakar, K. Stokes, F. Huang, R. Albert, A. August
Journal of Immunology
Demographic History and Rare Allele Sharing Among Human Populations
S. Gravel, B. Henn, R. Gutenkunst, A. Indap, G. Marth, A. Clark, et al.
Proceedings of the National Academy of Sciences
Functional Octahedral Rotations: A Path to New Multifunctional Electronic, Magnetic, and Orbital Materials
N. Benedek, C. Fennie
Cornell University Technical Report
Hybrid Improper Ferroelectricity: A Mechanism for Controllable Polarization-Magnetization Coupling
N. Benedek, C. Fennie
Physical Review Letters
Large Eddy Simulation/Probability Density Function Modeling of a Turbulent CH4/H2/N2 Jet Flame
H. Wang, S. Pope
Proceedings of the Combustion Institute
Magnetic Phase Diagram of Spatially Anisotropic, Frustrated Spin-1/2 Heisenberg Antiferromagnet on a Stacked Square Lattice
K. Majumdar
Journal of Physics
Making Time-Stepped Applications Tick in the Cloud
T. Zou, G. Wang, M. Vaz Salles, D. Bindel, A. Demers, J. Gehrke, W. White
ACM Symposium on the Cloud
Maximizing Computational Learning for Faculty and Student Scientists: The Ranger Virtual Workshop
S. Mehringer, N. Woody, A. Dolgert, S. Lantz
TeraGrid Conference (updated)
National Estimates of Gross Employment and Job Flows
J. Abowd, L. Vilhuber
Journal of Econometrics
Phase Separation in Lipid Membranes
F. Heberle, G. Feigenson
Cold Spring Harbor Perspectives in Biology
Protistan Microbial Observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger Insights into Species Richness
V. Edgcomb, W. Orsi, J. Bunge, S. Jeon, et. al.
International Society for Microbial Ecology
Spin-Wave Energy Dispersion of a Frustrated Spin-1/2 Heisenberg Antiferromagnet on a Stacked Square Lattice
K. Majumdar
Journal of Physics: Condensed Matter
Translational Regulation in Nutrigenomics
B. Liu, S. Qian
Advances in Nutrition Journal
2010
A Plausible Role for the Presence of Internal Shine-Dalgarno Sites
L. Ponnala
Bioinformatics and Biology Insights
A Probability-Based Method for Calculating Effective Diffusion Coefficients of Composite Media
R. Keskin, M. Grigoriu
Probabilistic Engineering Mechanics
A Variational Bayes Algorithm for Fast and Accurate Multiple Locus Genome-Wide Association Analysis
B. Logsdon, G. Hoffman, J. Mezey
BMC Bioinformatics
Author Identifiers in Scholarly Repositories
S. Warner
Cornell University Technical Report
Behavioral Simulations in MapReduce
G. Wang, M. Vaz Salles, B. Sowell, X. Wang, T. Cao, A. Demers, J. Gehrke, W. White
Proceedings of the VLDB Endowment
Coherent Synchrotron Radiation Simulations for the Cornell Energy Recovery Linac
C. Mayes, G. Hoffstaetter
Proceedings of IPAC�10
Construction of an rsmX Co-Variance Model and Identification of Five rsmX non-coding RNAs in Pseudomonas Syringae pv. Tomato DC3000
S. Moll, D. Schneider, P. Stodghill, C. Myers, S. Cartinhour, M. Filiatrault
RNA Biology
How Adapt-N Calculates Field-Specific Sidedress N Recommendations for Corn
B. Moebius-Clune, H. van Es, J. Melkonian
Cornell Adaptive N Management Fact Sheet
Large Eddy Simulation/Probability Density Function Modeling of a Turbulent CH4/H2/N2 Jet Flame
H. Wang, S. Pope
Proceedings of the Combustion Institute
Local Ionosphere Model Estimation From Dual-Frequency GNSS Observables
R. Mitch, M. Psiaki
Proceedings ION GNSS 2010
Megadalton Complexes in the Chloroplast Stroma of Arabidopsis thaliana
P. Olinares, L. Ponnala, K. van Wijk
Molecular and Cellular Proteomics
Microbial Eukaryotes in the Hypersaline Anoxic L�Atalante Deep-Sea Basin
E. Alexander, A. Stock, H-W Breiner, A. Behnke, J. Bunge, et. Al
Environmental Microbiology
National Estimates of Gross Employment and Job Flows from the Quarterly Workforce Indicators
J. Abowd, L. Vihuber
Journal of Econometrics
NNY Research Supports Precision Farming Tool for Corn Growers
J. Melkonian, H. van Es, M. Davis
Northern New York Agricultural Program
Overview of the Cornell University Center for Advanced Computing Sustainable Funding Model
D. Lifka, R. Alvord, S. Mehringer, P. Redfern
NSF Workshop on Sustainable Funding for HPC Centers White Paper
Population Dynamics of PIWI-RNAs (piRNAs) and their Targets in Drosophila
J. Lu, A. Clark
Genome Research
Pulsar Discovery by Global Volunteer Computing
B. Knispel, B. Allen, J. Cordes
Science
Sustainable Funding and Business Models for Academic Cyberinfrastructure Facilities
S. Ahalt, A. Apon, D. Lifka, H. Neeman
National Science Foundation Workshop Report
Weak Second-Order Splitting Schemes for Lagrangian Monte Carlo Methods for the Composition PDF/FDF Transport Equations
H. Wang, P. Popov, S. Pope
Journal of Computational Physics
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Analyzing the Orientation Dependence of Stresses in Polycrystals
H. Ritz, P. Dawson, T. Marin
Journal of Mechanics and Physics of Solids
Bioeconomics Meets Biocomplexity: The Gypsy Moth
X. Yang, J. Conrad
Cornell University Technical Report
Computationally Efficient Implementation of Combustion Chemistry in Parallel PDF Calculations
L. Lu, S. Lantz, Z. Ren, S. Pope
Journal of Computational Physics
Constraining the Bulk Properties of Dense Matter by Measuring Millisecond Pulsar Masses
Whitepaper for Decadal Survey CFP Panel
Discovery of Three Pulsars from a Galactic Center Pulsar Population
J. Deneva, J. Cordes, T. Lazio
Astrophysical Journal
Dynamic Modeling of Workforce Requirements for Mass Prophylaxis under Highly Uncertain Conditions
M. Castorena, C. Hawkins, N. Hupert, K. King, J. Muckstadt, C. Wu, W. Xiong
Cornell University Technical Report
Efficient Extraction of Individual Pages from a Complete Web Crawl
O. Krokhin
Cornell University Technical Report
EScience in Practice: Lessons from the Cornell Web Lab
W. Arms, M. Calimlim, L. Walle
D-Lib Magazine
Extending the Recursive Jensen-Shannon Segmentation of Biological Sequences
S. Cheong, P. Stodghill, D. Schneider, S. Cartinhour, C. Myers
Cornell University Technical Report
Extreme Astrophysics with Neutron Stars
D. Lai, M. van Kerkwijk, J. Arons, E. Brown, J. Cordes, et al.
Whitepaper for Astro 2010 Decadal Survey Committee
Flapping Wing Flight Can Save Aerodynamic Power
U. Pesavento, Z. Wang
Physical Review
Fruit Flies Modulate Passive Wing Pitching to Generate In-Flight Turns
A. Bergou, L. Ristroph, J. Guckenheimer, I. Cohen, Z. Wang
Cornell University Technical Report
Gravitational Wave Astronomy Using Pulsars: Massive Black Hole Mergers & the Early Universe
Whitepaper for Decadal Survey CFP Panel
Intergenerational Resource Transfers with Random Offspring Numbers
K. Arrow, S. Levin
Proceedings of the National Academy of Sciences
Landmark Classification in Large-Scale Image Collections
Y. Li, D. Crandall, D. Huttenlocher
Cornell University Technical Report
Mapping the World's Photos
D. Crandall, L. Backstrom, D. Huttenlocher, J. Kleinberg
Cornell University Technical Report
Microbial Community Structure in the North Pacific Ocean
M. Brown, G. Philip, J. Bunge, et al.
ISME Journal
Minimum Cost Data Aggregation with Localized Processing for Statistical Inference
A. Anandkumar, L. Tong, A. Swami, A. Ephremides
IEEE INFOCOM
Model-Based Estimates of Right Whale Habit Use in the Gulf of Maine
A. Pershing, N. Record, B. Monger, C. Mayo, M. Bown, T. Cole, R. Kenney, D. Pendleton, L. Woodard
Marine Ecology
Module Evolution and Substrate Specificity of Fungal Nonribosomal Peptide Synthetases
K. Bushley, D. Ripoll, B. Turgeon
BMC Evolutionary Biology
Parallel Stochastic Global Optimization Using Radial Basis Functions
R. Regis, C. Shoemaker
INFORMS Journal on Computing
Polymerase Chain Reaction Primers Miss Half of rRNA Microbial Diversity
S. Hong, J. Bunge, et al.
ISME Journal
Positional Effects on Citation and Readership in arXiv
A. Haque, P. Ginsparg
JASIST
PPDB, the Plant Proteomics Database at Cornell
Q. Sun, B. Zybailov, W. Majeran, G. Friso, P. Olinares, K. van Wijk
Nucleic Acids Research
Protistan Community Patterns within the Brine and Halocline of Deep Hypersaline Anoxic Basins
V. Edgcomb, W. Orsi, C. Leslin, S. Epstein, J. Bunge, S. Jeon, M. Yakimov, A. Behnke, T. Stoeck
Extremophiles Journal
Prostistan Diversity in Suboxic and Anoxic Waters of the Baltic Sea as Revealed by 18S rRNA Clone Libraries
A. Stock, K. Jurgens, J. Bunge. T. Stoeck
Aquatic Microbial Ecology
Sensitivity Calculations in PDF Modelling of Turbulent Flames
Z. Ren, S. Pope
Proceedings of the Combustion Institute
Sensitivity to Grain Discretization of the Simulated Crystal Stress Distributions in FCC Polycrystals
H. Ritz, P. Dawson
Modelling and Simulation in Materials Science and Engineering
Surface Mesh Regeneration Considering Curvatures
A. Miranda, L. Martha, P. Wawrzynek, A. Ingraffea
Engineering with Computers
The Context Sensitivity Problem in Biological Sequence Segmentation
S. Cheong, P. Stodghill, D. Schneider, S. Cartinhour, C.Myers
Cornell University Technical Report
The Cornell Energy Recovery Linac: Update on a Future Source of Coherent Hard X-Rays
D. Bilderback, B. Dunham, G. Hoffstaetter, Al Temnykh, S. Gruner
Synchrotron Radiation News
The GALEX Arecibo SDSS Survey
B. Catinella, D. Schiminovich, et al.
Cornell University Technical Report
2008
A Comparison of Finite Element and Atomistic Modelling of Fracture
V. Coffman, J. Sethna, G Heber, M. Liu, A. Ingraffea, N. Bailey, E. Barker
Modelling and Simulation in Materials Science and Engineering
A Direct Multiple Histogram Reweighting Method for Optimal Computation of the Density of States
M. Fenwick
Journal of Chemical Physics
A Multi-Dimensional View on Information Retrieval of CMS Data
A. Dolgert, L. Gibbons, V. Kuznetsov, C.D. Jones, D. Riley
Journal of Physics
A Multi-Length Scale Sensitivity Analysis for the Control of Texture-Dependent Properties in Deformation Processing
V. Sundararaghavan, N. Zabaras
International Journal of Plasticity
A Non-Linear Dimension Reduction Methodology for Generating Data-Driven Stochastic Input Models
B. Ganapathysubramanian, N. Zabaras
Journal of Computational Physics
A Scalable Framework for the Solution of Stochastic Inverse Problems Using a Sparse Grid Collocation Approach
N. Zabaras, B. Ganapathysubramanian
Journal of Computational Physics
A Seamless Approach towards Stochastic Modeling: Sparse Grid Collocation and Data Driven Input Models
B. Ganapathysubramanian, N. Zabaras
Finite Elements in Analysis and Design
A Stochastic Multiscale Framework for Modeling Flow through Random Heterogeneous Porous Media
B. Ganapathysubramanian, N. Zabaras
Journal of Computational Physics
An Improved Algorithm for In Situ Adaptive Tabulation
L. Lu, S. Pope
Journal of Computational Physics
Analysis Environments for CMS
C.D. Jones, L. Luc, B. Hegner
Journal of Physics
Calculating the Jaccard Similarity Coefficient with Map Reduce for Entity Pairs in Wikipedia
J. Bank, B. Cole
Cornell Technical Report
Challenges in Continuum Modeling of Intergranular Fracture
V. Coffman, J. Sethna, G. Heber, A. Liu, A. Ingraffea, N. Bailey, E. Barker
Nature Materials (submitted to)
Characterization of the PvdS-Regulated Promoter Motif in Pseudomonas syringae pv. Tomato DC3000 Reveals Regulon Members and Insights Regarding PvdS Function in other Pseudomonads
B. Swingle, D. Thete, M. Moll, C Myers, D. Schneider, S. Cartinhour
Molecular Microbiology
Combined Monitoring and Modeling Indicate the Most Effective Agricultural Best Management Practice
Z. Easton, M. Walter, T. Steenhuis
Journal of Environmental Quality
Cyberscholarship: High Performance Computing meets Digital Libraries
W. Arms
Journal of Electronic Publishing
Digital Research Data Curation
Cornell University Library Data Working Group Report
Environmental rRNA Inventories Miss Over Half of Protistan Diversity
S. Jeon, J. Bunge, C. Leslin, T. Stoeck, S. Hong, S. Epstein
BMC Microbiology
Evolution of the Electronic Excitation Spectrum with Strongly Diminishing Hole Density in Superconducting Bi2Sr2CaCu2O8+δ
J. Alldredge, J. Lee, K. McElroy, M. Wang, K. Fujita, Y.Kohsaka, C. Taylor, H. Eisaki, S. Uchida, P. Hirschfeld, J. Davis
Nature Physics
Genome-Wide Analyses Reveal Lineage Specific Contributions of Positive Selection and Recombination to the Evolution of Listeria Monocytogenes
R. Orsi, Q.Sun, M. Wiedmann
BMC Evolutionary Biology
Global Transcriptional Responses of Pseudomonas Syringae CD3000 to Changes in Iron Bioavailability In Vitro
P. Bronstein, M. Filiatrault, C. Myers, M. Rutzke, D. Schneider, S. Cartinhour
BMC Microbiology
High-Resolution Spatial Interpolation of Weather Generator Parameters Using Local Weighted Regressions
D. Wilks
Agricultural and Forest Meteorology
Homologous Recombination is Very Rare or Absent in Human Influenza A Virus
M. Boni, Y. Zhou, J. Taubenberger, E. Holmes
Journal of Virology
Imaging the Impact on Cuprate Superconductivity of Varying the Interatomic Distances within Individual Crystal Unit Cells
J. Slezak, J. Lee, M. Wang, K. McElroy, K. Fujita, B. Andersen, P. Hirschfeld, H.Eisaki, S. Uchida, J. Davis
Proceedings of the National Academy of Science
Microarray for Molecular Typing of Salmonella Enterica Serovars
J. Saria, R. Palaniappan, D. Chiu, J. Phan, L. Ponnala, et al.
Molecular and Cellular Probes
Microbial Eukaryotes in the Hypersaline Anoxic L'Atalante Deep-Sea Basin
E. Alexander, A. Stock, H-W. Breiner, A. Behnke, J. Bunge, M. Yakimov, T. Stoeck
Environmental Microbiology
Modeling Diffusion in Random Heterogeneous Media: Data-Driven Models, Stochastic Collocation and the Variational Multiscale Method
B. Ganapathysubramanian, N. Zabaras
Physical Reviews B (in preparation)
Modeling the Response of HCP Polycrystals Deforming by Slip and Twinning Using a Finite Element Representation of the Orientation Space
B. Kouchmeshky, N. Zabaras
International Journal of Plasticity (submitted)
Modeling Zooplankton Development Using the Monotonic Upstream Scheme for Conservation Laws
N. Record, A. Pershing
American Society of Limnology and Oceanography
Module Evolution and Substrate Specificity of Funcal Nonribosomal Peptide Synthetases Involved in Siderophore Biosynthesis
K. Bushley, D. Ripoll, B. Turgeon
BMC Evolutionary Biology
Non-Linear Dimension Reduction Methodology for Generating Data-Driven Stochastic Input Models
B. Ganapathysubramanian, N. Zabaras
Journal of Computational Physics (submitted)
Parametric Models for Estimating the Number of Classes
J. Bunge, K. Barger
Biometrical Journal
Proportionally More Deleterious Genetic Variation in European than in African Populations
K. Lohmueller, A. Indap, S. Schmidt, A. Boyko, R. Hernandez, M. Hubisz, J. Sninsky, T. White, S. Sunyaev, R. Nielsen, A. Clark, C. Bustamante
Nature
Provenance in High-Energy Physics Workflows
A. Dolgert, L. Gibbons, L., C. Jones, V. Kuznetsov, M. Riedewald, D. Riley, G. Sharp, P. Wittich
Computing in Science & Engineering
Radar-Guided Interpolation of Climatological Precipitation Data
A. DeGaetano, D. Wilks
International Journal of Climatology
Rapid Web Development Using AJAX and Python
A. Dolgert, L. Gibbons, V. Kuznetsov
Journal of Physics
Re-estimation of Lexical Parameters for Treebank PCFGs
T. Deoskar
Cornell University Technical Report
Roadmap to new virulence determinants in Pseudomonas syringae: Insights from comparative genomics and genome organization
M. Lindeberg, C Myers, A. Collmer, D. Schneider
Molecular Plant-Microbe Interactions
Role of Copper, Zinc-Superoxide Dismutase in Catalyzing, Nitrotyrosine Formation in Murine Liver
Z. Jian-Hong, X. Zhang, C. Roneker, J. McClung, S. Zhang, T. Thannhauser, D. Ripoll, Q. Sun, X. Lei
Free Radical Biology & Medicine
Satisfiability, Sequence Niches, and Molecular Codes in Cellular Signaling
C. Myers
IET Systems Biology
Sloppiness, Robustness and Evolvability in Systems Biology
B. Daniels, Y. Chen, J. Sethna, R. Gutenkunst, C. Myers
Current Opinion in Biotechnology
Structure of the Glucanase Inhibitor Protein (GIP) Family from Phytophthora Species
C. Damasceno, J. Bishop, D. Ripoll, J. Win, S. Kamoun, J. Rose
Molecular Plant-Microbe Interactions
The Arecibo Legacy Fast ALFA Survey: VI. Second HI Source Catalog of the Virgo Cluster Region
B. Kent, R. Giovanelli, M. Haynes, A. Martin, A. Saintonge, S. Stierwalt, T. Balonek, N. Brosch, R. Koopman
The Astronomical Journal
The CMS Dataset Bookkeeping Service
A. Afaq, A. Dolgert, Y. Guo, C. Jones, S. Kosyakov, V. Kuznetsov, L. Lueking, D. Riley, V. Sekhri
Journal of Physics
The Ranger Virtual Workshop
S. Mehringer, N. Woody, A. Dolgert, D. Fuller, S. Lantz, D. Stanzione, J. Zollweg
TeraGrid 2008
Time Averaging Strategies in the Finite-Volume/Particle Hybrid Algorithm for the Joint PDF Equation of Turbulent Reactive Flows
H. Wang, S. Pope
Combustion Theory and Modelling
Turbulent Dispersion from Line Sources in Grid Turbulence
S. Viswanathan, S. Pope
Physics of Fluid
Variational Method for Estimating the Rate of Convergence of Markov-Chain Monte Carlo Algorithms
F. Casey, J. Waterfall, R. Gutenkunst, C. Myers, J. Sethna
2007
A Non-Intrusive Stochastic Galerkin Approach for Modeling Uncertainty Propagation in Deformation Processes
S. Acharjee, N. Zabaras
Computational Stochastic Mechanics
A Tomato Endo-�-1, 4-glucanase, SlCel9C1, Represents a Distinct Subclass with a New Family of Carbohydrate Binding Modules
B.R. Urbanowicz, C. Catala, D. Irwin, D.B. Wilson, D.R. Ripoll, J.K.C. Rose
Journal of Biological Chemistry
Cayuga: A General Purpose Event Monitoring System
A. Demers, J. Gehrke, B. Panda, M. Riedewald, V. Sharma, W. White
Conference on Innovative Data Systems Research (CIDR 2007)
Computational Fracture Mechanics of Concrete Structures: A Retrospective through Multiple Lenses
J. Emery, J. Hochhalther, A. Ingraffea
Cornell University Technical Report
Digital Material: A Flexible Atomistic Simulation Code
N. Bailey, T. Cretegny, J. Sethna, V. Coffman, A. Dolgert, C. Myers, J. Schiotz, J. Mortensen
Cornell Technical Report
Dynamically Dimensioned Search
Algorithm for Computationally Efficient Watershed Model Calibration
B. Tolson, C.A. Shoemaker
Water Resources Research
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
A.G. Clark and the Rhesus Macaque Genome Sequencing and Analysis Consortium
Science
Extracting Falsifiable Predictions from Sloppy Models
R. Gutenkunst, F. Casey, J. Waterfall, C. Myers, J. Sethna
Annals of the New York Academy of Science
Modeling the Response of HCP Polycrystals Deforming by Slip and Twinning Using a Finite Element Representation of the Orientation Space
B. Kouchmeshky, N. Zabaras
Cornell University Technical Report
Multiscale Modeling of Alloy Solidification Using a Database Approach
L. Tan, N. Zabaras
Journal of Computational Physics
Optimal Experimental Design in an EGFR Signaling and Down-Regulation Model
F. Casey, D. Baird, Q. Feng, R. Gutenkunst, J. Waterfall, C Myers, K. Brown, R. Cerione, J. Sethna
IET Systems Biology
Optimization of Quantum Monte
Carlo Wave Functions by Energy Minimization
J. Toulouse, C. Umrigar
Journal of Chemical Physics
Protistan Diversity in the Arctic: A Case of Paleoclimate Shaping Modern Biodiversity?
T. Stoeck, J. Kasper, J. Bunge, C. Leslin, V. Ilyin, S. Epstein
PLoS ONE
Python for Education: Computational Methods for Nonlinear Systems
C. Myers, J. Sethna
Computing for Science and Engineering
Python Unleashed on Systems Biology
C. Myers, R. Gutenkunst, J. Sethna
Computing in Science and Engineering
Scalable Framework for the Solution of Stochastic Inverse Problems Using a Sparse Grid Collocation Approach
N. Zabaras, B. Ganapathysubramanian
Cornell University Technical Report
Support Vector Training of
Protein Alignment Models
R. Elber, T. Joachims, J. Pillardy,
C. Yu
Research in Computational Molecular
Biology
Topology of Type II REases Revisted; Structural Classes and the Common Conserved Core
M. Niv, D. Ripoll, J. Vila, A. Liwo, E. Vanamee, A. Aggarwal, H. Weinstein, H. Scheraga
Nucleic Acids Research
Universally Sloppy Parameter
Sensitivities in Systems Biology
R. N. Gutenkunst, J.J. Waterfall,
F.P. Casey, K.S. Brown, C.R. Myers, J.P. Sethna
Cornell University Technical Report
2006
A Localized Specific Interaction
Alters the Unfolding Pathways of Structural Homologues
G. Xu, M. Narayan, I. Kurinov, D.R. Ripoll, E.
Welker, M. Khalili, S.E. Ealick, H.A. Scheraga
Journal of American Chemical Society
A
Research Library Based
on the Historical Collections of the Internet Archive
W. Arms, S. Aya, P Dmitriev, B. Kot,
R. Mitchell, L. Walle
D-Lib Magazine
Advanced Computational Techniques
for Materials-by-Design
N. Zabaras
Cornell University Technical Report
ALPS: A Software Framework
for Parallel Space-Time Adaptive Processing
K. Lee, A.W. Bojanczyk
Applied Parallel Computing
Bayesian Calibration of Computationally
Expensive Models Using Optimization and Radial Basic Function Approximation
N. Blizniouk, P. Mugunthan, R. Regis,
D. Ruppert, C. Shoemaker, S. Wild
Cornell University Technical Report
Building a Research Library
for the History of the Web
W. Arms, S. Aya, P. Dmitriey, B.
Kot, R. Mitchell, L Walle
Joint Conference on Digital Libraries
Cluster Assimilation and Collisional
Filtering on Metal-Oxide Surfaces
D.A. Freedman, T.A. Arias
Physical Review Letters
Comment on
�Computational Improvements Reveal Great Bacterial Diversity and High
Metal Toxicity in Soil�
J. Bunge, S.S. Epstein, D.G. Peterson
Science
Development and Characterization
of a Normalized Canine Retinal cDNA Library for Genomic and Expression
Studies
B. Zangerl, Q. Sun, J. Pillardy,
J. Johnson, P. Schweitzer, A. Hernandez, L. Liu, G. Acland, G. Aguirre
Investigative Ophthalmology and
Visual Science
Distributed System Based on
Web Services for Computational Science Simulations
K. Pingali, P. Stodghill
Proceedings of the International
Conference on Supercomputing
Efficient Computation of the
First Passage Time Distribution of the Generalized Master Equation by
Steady-State Relaxation
D. Shalloway, A. Faradkijan
Journal of Chemical Physics
Efficient Query Processing
on Unstructured Tetrahedral Meshes
S. Papadomanolakis, A. Ailamaki,
J. Lopez, T. Tu, D.R. O�Hallaron, G. Heber
Proceedings of ACM SIGMOD
Evaluation of the PNM Model
for Simulating Drain Flow Nitrate-N Concentration Under Manure-Fertilized
Maize
J.M. Sogbedji, H.M. van Es, J.J.
Melkonian, R.R. Schindelbeck
Plant and Soil
From Wayback Machine to Yesternet:
New Opportunities for Social Science
W. Arms, D. Huttenlocher, J. Kleinberg,
M. Macy, D Strang
Second International Conference
on e-Social Science
Ground State of the Pseudogap
in Cuprate Superconductors
T. Valla, A.V. Fedorov, Jinho Lee,
J.C. Davis, G.D. Gu
Science
Microfluidic Biomaterials
A.D. Stroock, M. Cabodi
M.R.S. Bulletin
Mobile MPI Programs in Computational
Grids
R. Fernandes, K. Pingali, P. Stodghill
ACM 2006 Symposium on Principles
and Practice of Parallel Computing
�Propeller� Regime of
Disk Accretion to Rapidly Rotating Stars
G.V. Ustyugova, A.V. Kodoba, M.M.
Romanova, R.V.E. Lovelace
The Astrophysical Journal
Protein Translocation Through
a Tunnel Induces Changes in Folding Kinetics: A Lattice Model Study
L.M. Contreras Martinez, F.J. Martinez-Verachoechea,
P. Pohkarel, A.D. Stroock, F.A. Escobedo, M.P. DeLisa
Biotechnology & Bioengineering
Reported Anatomical Variability
Naturally Leads to Multimodal Distributions of Denavit-Hartenberg
V. Santos, F. Valero-Cuevas
IEEE Transactions of Biomedical
Engineering
Risk Neutral Compatibility
with Option Prices
J. Jacod, P. Protter
Cornell University Technical Report
Spatial Interpolation of Daily
Maximum and Minimum Air Temperature Based on Meteorological Model Analysis
and Independent Observation
A.T. DeGaetano, B.N. Belcher
Cornell University Technical Report
Strategic Design of Distribution
Systems with Economies of Scale in Transportation
J.R. Lin, L.K. Nozick, M.A. Turnquist
Annals of Operation Research
Supporting Finite Element
Analysis with a Relational Database Backend; Part III
G. Heber, C. Pelkie, A. J. Dolgert.
J. Gray, D. Thompson
Microsoft
Research Technical Report
Supporting Finite Element
Analysis with a Relational Database Backend; Part II
G. Heber, J. Gray
Microsoft Research Technical Report
Synthetic Statistical Approach
Reveals a High Degree of Richness of Microbial Eukaryotes in an Anoxic
Water Column
S.-O. Jean, J. Bunge, T. Stoeck,
K.J.-A. Barger, S.-H. Hong, S.S. Epstein
Applied and Environmental Microbiology
The Sloppy Model Universality
Class and Vandermonde Matrix
J.J. Waterfall, F.P. Casey, R.N.
Gutenkunst, K.S. Brown, C.R. Myers, P.W. Brouwer, V. Elser, J.P. Sethna
Physical Review Letters
Three Case Studies of Large-Scale
Data Flows
W. Arms, S. Aya, M. Calimlim, J.
Cordes, P. Deneva, P. Dmitriev, J. Gehrke, L. Gibbons, C.D. Jones, V.
Kuznetsov, D. Lifka, M. Riedewald, D. Riley, A. Ryd, G.J. Sharp
IEEE Proceedings on Workflow and
Dataflow for Scientific Applications
Whole-Genome Expression Profiling Defines the HrpL Regulon of Pseudomonas syringae pv. Tomato DC3000
A.O. Ferreira, C.R. Myers, J.S. Gordon, G.B. Martin, M. Vencato, A. Collmer, M.D. Wehling, J.R. Alfano, G. Moreno-Hagelsieb, W.F. Lamboy, G. DeClerck, D.J. Schneider, S.W. Cartinhour
Molecular Plant-Microbe Interactions
2005
A Method to Infer Time of
Observation at U.S. Cooperative Observer Network Stations Using Model
Analyses
B.N. Belcher, A.T. DeGaetano
Cornell University Technical Report
A Surface Loop of the Potato
Leafroll Virus Coat Protein is Involved in Virion Assembly, Systemic
Movement, and Aphid Transmission
L. Lee, I.B. Kaplan, D.R. Ripoll,
D. Liang, P. Palukaitis, S.M. Gray
Journal of Virology
A Variable Temperature EPR
Study of Mn2+
-doped NH4C10.9I0.1
Single Crystal at 170 GHz: Zero-Field Splitting Parameter and its
Absolute Sign
S. K. Misra, S.I. Andronenko, P.
Chand, K.A. Earle, S.V. Paschenko, J.H. Freed
Journal of Magnetic Resonance
Coupling Between Conformation
and Proton Binding in Proteins
J.
Vila, D.R. Ripoll, Y.A. Arnautova, Y.N. Vorobjev, H.A. Scheraga
Proteins
Detection of Repolarization Alternans With an Implantable Cardioverter Defibrillator Lead in a Porcine Model
Maybhate, S.C. Hao, S. Iwai, J.U. Lee, A.B. Guttigoli, K.Stein, B. Lerman, D. Christini
IEEE Transactions on Biomedical Engineering
Electric Organ Discharge Patterns
During Group Hunting by a Mormyrid Fish
M.E. Arnegard, B.A. Carlson
Proceedings of the Royal Society
Evolutionary Robotics and
Open-Ended Design Automation
H. Lipson
Biometrics
High-Frequency ESR at ACERT
K.A. Earle, B. Dzikovski. W. Hofbauer,
J.K. Moscicki, J.H. Freed
Magnetic Resonance in Chemistry
Insights into Dark Energy:
Interplay Between Theory and Observation
R. Bean, S. Carroll, M. Trodden
Cornell University Technical Report
Lattice Strain Partitioning
in a Two-Phase Alloy and its Redistribution Upon Yielding
T.S. Han, Paul R. Dawson
Materials Science and Engineering
Measuring and Modeling the
Appearance of Finished Wood
S.R. Marchner, S.H. Westin, A. Arbree,
J.T. Moon
ACM Transactions on Graphics (SIGGRAPH
2005 Proceedings)
Minimizing CVaR and VaR for a Portfolio of Derivatives
S. Alexander, T.F. Coleman, Y. Li
Journal of Banking and Finance
Modeling Nitrogen Dynamics
Under Maize on Ferralsols in Western Africa
J.M. Sogbedji, H.M. van Es, K.L.
Agbeko
Nutrient Cycling in Agroecosystems
Multivariate Optimization
of a High Brightness DC Gun Photoinjector
I. Bazarov, C.K. Sinclair
Physical Review
Nonlinear Spectroscopy of
Resonantly Coupled Classical Mechanical Molecular Vibrations
W.G. Noid, R.F. Loring
Molecular Physics
Physics-Based Protein-Structure
Prediction Using a Hierarchical Protocol Based on the UNRES Force Field: Assessment in Two Blind Tests
S. Lodziej, C. Czaplewski, A. Liwo,
M. Chinchio, M. Nanias, JA Vila, M. Khalili, Y.A. Arnautova, A. Jagielska,
M. Makowski, H.D. Schafroth, R. Kazmierkiewicz, . D.R. Ripoll, J. Pillardy, J.A. Saunders, Y.K. Kang, K.D. Gibson, H.A. Scheraga
Proceedings of the National Academy
of Science
Polar Octahedral Rotations: A Path to New Multifunctional Materials
W. Majeran, Y. Cai, Q. Sun, K.J.
van Wijk
Plant Cell
Predicting Microbial Species
Richness
S.-H. Hong, J. Bunge, S.-O. Jeon,
S.S. Epstein
National Academy of Science
Reducing Communication Time Through Message Prefetching
J. Ke, Martin Burtscher, E. Speight
Proceedings of International Conference on Parallel and Distributed Processing
Scientific Data Management in the Coming Decade
J. Gray, D.T. Liu, M.Nieto-Santisteban,
A. Szalay, D.J. DeWitt, G. Heber
ACM SIGMOD
Soil Test, Aerial Image and Yield Data as Inputs for Site-specific Fertility and Hybrid Management Under Maize
A.
Magri, H. M. van Es, M.A. Glos, W.J. Cox
Precision
Agriculture
Structural Damage Identification
Using Co-Evolution and Frequency Response Functions
B. Kouchmeshky, W. Aquino
Cornell University Technical Report
Supporting Finite Element
Analysis with a Relational Database Backend; Part I
G. Heber, J. Gray
Microsoft Research Technical Report
The Influence of Chemical
Mechanisms on PDF Calculations of Nonpremixed Piloted Jet Flames
R.R. Cao, S.B. Pope
Combustion and Flame Journal
The Maximum Density Droplet to Lower Density Droplet Transition in Quantum Dots
A.D. Guclu, C.J. Umrigar
Physical Review
Three-Dimensional, Parallel, Finite Element Simulation of Fatigue Crack Growth in a Bevel Pinion Gear
A. Ural, G. Heber, P.A. Wawrzynek, A.R. Ingraffea, D.G Lewicki, Joaquim Neto
Engineering Fracture Mechanics Journal
�
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2004
A Vision for PetaByte Data
Management and Analysis Services for the Arecibo Telescope
M. Calimlim, J. Cordes, A. Demers,
J. Deneva, J. Gehrke, D. Kifer, M. Riedewald, J. Shanmugasundaram
IEEE Computer Society
Accuracy and Power of Statistical
Methods for Detecting Adaptive Evolution Protein Coding Sequences and
for Identifying Positively Selected Sites
W. Wong, Z. Yang, N. Goldman, R. Nielsen
Genetics
Enriching the Sequence Substitution
Matrix by Structural Information
O. Teodorescu, T. Galor, J. Pillardy,
R. Elber
Protein
Hedging Guarantees in Variable
Annuities (Under Both Market and Interest Rate Risks)
T.F. Coleman, Y. Li, M.-C. Patron
Cornell University Technical Report
Implementation and Evaluation
of a Scalable Application-Level Checkpoint-Recovery Scheme for MPI Programs
M. Schulz, G. Bronevetsky, R. Fernandes,
D. Marques, K. Pingali, P. Stodghill
Supercomputing 2004
In-Depth Analysis of the Thylakoid
Membrane proteome of Arabidopsis thaliana Chloroplasts: New Proteins,
New Functions, and a Plastid Proteome Database
G. Frisco, L. Guacamole, A. J. Sternberg,
J.B. Pettier, A. Rubella, Q. Sun, K.J. van Wink
Plant Cell
Integrated Design, Deployment
and Inference for Robot Ecologies
J. Bongard, H. Lipson
Proceedings of Robosphere 2004
Novel Two-Dimensional Photonic
Crystals Designed by Evolutionary Algorithms
S.F. Preble, H. Lipson, M. Lipson
Proceedings of the International
Society for Optical Engineering 2004
PeerGAD: a Peer-Review-based
and Community-Centric Web Application for Viewing and Annotating Prokaryotic
Genome Sequences
M.D. D�Ascenzo, A. Collmer, G.B.
Martin
Nucleic Acids Research
Performance Analysis of the
Pipe Problem, a Multi-Physics Simulation Based on Web Services
P. Stodghill, R. Cronin, K. Pingali,
G. Heber
Cornell University Technical Report
Performance Modeling and Optimization Framework for Space-Time Adaptive Processing (STAP)
K. Lee, A. Bojanczyk
IEEE International Parallel and Distributed Processing Symposium
Robustly Hedging Variable
Annuities with Guarantees Under Jump and Volatility Risks
T. Coleman, Y. Kim, Y. Li, M.-C.
Patron
Cornell University Technical Report
Runtime Compression of MPI
Messages to Improve the Performance and Scalability of Parallel Applications
J. Ke, M. Burtscher, E. Speight
Supercomputing 2004
Sam68 Exerts Separable Effects
on Cell Cycle Progression and Apoptosis
S.J. Taylor, R.J. Resnick, D. Shalloway
BMC Cell Biology
The Protein Folding Problem:
Global Optimization of Force Fields
H.A. Scheraga, A. Liwo, S. Oldziej,
C. Czaplewski, J. Pillardy, D.R. Ripoll, J.A. Vila, R. Kazmierkiewicz,
J.A. Saunders, Y.A. Arnautova, A. Jagielska, M. Chinchio, M. Nanias
Frontiers of Biology Journal
Vortex-Induced Vibrations
C.H.K. Williamson, R. Govardhan
Annual Review of Fluid Mechanics
